Resources

FoodAltas Logo
A quality-controlled food knowledge graph constructed from scientific literature with large language models.

FoodAtlas is an expanding knowledge graph that aims to capture comprehensive relationships between foods and other entities, including chemicals and diseases. Utilizing powerful large language models, FoodAtlas can parse millions of scientific articles to efficiently extract relationships pertaining to foods, while simultaneously assigning quality scores to each relationship based on the source’s trustworthiness.

FoodAtlas Image

Project Team

Ilias Tagkopoulos

Faculty

Portrait of Shanghyeon Kim

Postdoc

Jason Youn
Fangzhou Li
Portrait of Arielle Yoo
Gabriel Simmons

Graduate Students

Lukas Maximilian Masopust, Front-End Software Engineer

Staff

Byproduct Database Logo

Agricultural and food processing byproducts are an untapped resource for supporting circular systems. The byproduct database (BPDB) maps and quantifies these byproducts, unlocking their potential for reuse in industries like nutraceuticals, cosmetics, and more.

Byproduct Database Image

Project Team

Edward Spang
Ilias Tagkopoulos

Faculty

 Sarah Kakadellis
Portrait of Kieran Heeley

Postdoc

Mariana Larrañaga Tapia

Graduate Students

Preclinical Database logo
Preclinical Database – a centralized, AI-powered repository for preclinical animal research.

The Preclinical Database is an AI-powered repository of in vivo preclinical animal studies from published and full-text research articles in PubMed Central. Our mission is to unlock large-scale preclinical evidence and accelerate the translation of preclinical research into clinical trials in drug development. Each preclinical study comprises disease, drug, and animal entities extracted and standardized to support interoperability with existing biomedical databases and ontologies.

Preclinical Database Image

Project Team

Ilias Tagkopoulos

Faculty

A portrait of Xu (Peter) Zhou

Postdoc

A portrait of Kaichi Xie

Graduate Students

Lukas Maximilian Masopust, Front-End Software Engineer

Staff

AgML Logo
AgML - a centralized framework for agricultural machine learning.

AgML is a centralized framework for agricultural machine learning. AgML provides access to public agricultural datasets for common agricultural deep learning tasks, with standard benchmarks and pre-trained models, as well the ability to generate synthetic data and annotations.

AgML Image

Project Team

Mason Earles

Faculty